IL_9KMX_022

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGACUC*GAGGCCC

Length

13 nucleotides

Bulged bases

9KMX|1|2|A|536, 9KMX|1|2|C|537, 9KMX|1|2|U|538, 9KMX|1|2|G|546, 9KMX|1|2|G|547

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|G|534
9KMX|1|2|G|535
9KMX|1|2|A|536
9KMX|1|2|C|537
9KMX|1|2|U|538
9KMX|1|2|C|539
*
9KMX|1|2|G|544
9KMX|1|2|A|545
9KMX|1|2|G|546
9KMX|1|2|G|547
9KMX|1|2|C|548
9KMX|1|2|C|549
9KMX|1|2|C|550

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30