IL_9KMX_040

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GCUAGA*UCUUGGACC

Length

15 nucleotides

Bulged bases

9KMX|1|2|U|954, 9KMX|1|2|U|969, 9KMX|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|G|952
9KMX|1|2|C|953
9KMX|1|2|U|954
9KMX|1|2|A|955
9KMX|1|2|G|956
9KMX|1|2|A|957
*
9KMX|1|2|U|966
9KMX|1|2|C|967
9KMX|1|2|U|968
9KMX|1|2|U|969
9KMX|1|2|G|970
9KMX|1|2|G|971
9KMX|1|2|A|972
9KMX|1|2|C|973
9KMX|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain O

Small ribosomal subunit protein uS11