IL_9KMX_060

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GCCCGUCGCUACUACCGAUUGGAUGGUUUA*UUGACUAUCUAGAGGAAGUAAAAGUCGUAAC

Length

61 nucleotides

Bulged bases

9KMX|1|2|G|1709, 9KMX|1|2|C|1710, 9KMX|1|2|U|1711, 9KMX|1|2|A|1719, 9KMX|1|2|U|1725, 9KMX|1|2|G|1727, 9KMX|1|2|U|1728, 9KMX|1|2|C|1807, 9KMX|1|2|A|1822, 9KMX|1|2|A|1825, 9KMX|1|2|G|1826, 9KMX|1|2|U|1827, 9KMX|1|2|C|1828, 9KMX|1|2|G|1829, 9KMX|1|2|U|1830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|G|1702
9KMX|1|2|C|1703
9KMX|1|2|C|1704
9KMX|1|2|C|1705
9KMX|1|2|G|1706
9KMX|1|2|U|1707
9KMX|1|2|C|1708
9KMX|1|2|G|1709
9KMX|1|2|C|1710
9KMX|1|2|U|1711
9KMX|1|2|A|1712
9KMX|1|2|C|1713
9KMX|1|2|U|1714
9KMX|1|2|A|1715
9KMX|1|2|C|1716
9KMX|1|2|C|1717
9KMX|1|2|G|1718
9KMX|1|2|A|1719
9KMX|1|2|U|1720
9KMX|1|2|U|1721
9KMX|1|2|G|1722
9KMX|1|2|G|1723
9KMX|1|2|A|1724
9KMX|1|2|U|1725
9KMX|1|2|G|1726
9KMX|1|2|G|1727
9KMX|1|2|U|1728
9KMX|1|2|U|1729
9KMX|1|2|U|1730
9KMX|1|2|A|1731
*
9KMX|1|2|U|1803
9KMX|1|2|U|1804
9KMX|1|2|G|1805
9KMX|1|2|A|1806
9KMX|1|2|C|1807
9KMX|1|2|U|1808
9KMX|1|2|A|1809
9KMX|1|2|U|1810
9KMX|1|2|C|1811
9KMX|1|2|U|1812
9KMX|1|2|A|1813
9KMX|1|2|G|1814
9KMX|1|2|A|1815
9KMX|1|2|G|1816
9KMX|1|2|G|1817
9KMX|1|2|A|1818
9KMX|1|2|A|1819
9KMX|1|2|G|1820
9KMX|1|2|U|1821
9KMX|1|2|A|1822
9KMX|1|2|A|1823
9KMX|1|2|A|1824
9KMX|1|2|A|1825
9KMX|1|2|G|1826
9KMX|1|2|U|1827
9KMX|1|2|C|1828
9KMX|1|2|G|1829
9KMX|1|2|U|1830
9KMX|1|2|A|1831
9KMX|1|2|A|1832
9KMX|1|2|C|1833

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32