IL_9KMY_061

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACUGGCUCAGCGUG*CCGUUGAACCCCAUUC

Length

31 nucleotides

Bulged bases

9KMY|1|2|U|1585, 9KMY|1|2|G|1587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|G|1536
9KMY|1|2|A|1537
9KMY|1|2|C|1538
9KMY|1|2|U|1539
9KMY|1|2|G|1540
9KMY|1|2|G|1541
9KMY|1|2|C|1542
9KMY|1|2|U|1543
9KMY|1|2|C|1544
9KMY|1|2|A|1545
9KMY|1|2|G|1546
9KMY|1|2|C|1547
9KMY|1|2|G|1548
9KMY|1|2|U|1549
9KMY|1|2|G|1550
*
9KMY|1|2|C|1582
9KMY|1|2|C|1583
9KMY|1|2|G|1584
9KMY|1|2|U|1585
9KMY|1|2|U|1586
9KMY|1|2|G|1587
9KMY|1|2|A|1588
9KMY|1|2|A|1589
9KMY|1|2|C|1590
9KMY|1|2|C|1591
9KMY|1|2|C|1592
9KMY|1|2|C|1593
9KMY|1|2|A|1594
9KMY|1|2|U|1595
9KMY|1|2|U|1596
9KMY|1|2|C|1597

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain U

Small ribosomal subunit protein uS10

Chain Z

Small ribosomal subunit protein eS25

Chain d

Small ribosomal subunit protein uS14