IL_9KMY_064

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGAUCGG*CCAUGAAC

Length

16 nucleotides

Bulged bases

9KMY|1|2|C|1609, 9KMY|1|2|G|1610

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|G|1604
9KMY|1|2|G|1605
9KMY|1|2|G|1606
9KMY|1|2|A|1607
9KMY|1|2|U|1608
9KMY|1|2|C|1609
9KMY|1|2|G|1610
9KMY|1|2|G|1611
*
9KMY|1|2|C|1628
9KMY|1|2|C|1629
9KMY|1|2|A|1630
9KMY|1|2|U|1631
9KMY|1|2|G|1632
9KMY|1|2|A|1633
9KMY|1|2|A|1634
9KMY|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19