IL_9KMY_071

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAUGGUUUAGUGAG*CGAACUUGACUAUC

Length

28 nucleotides

Bulged bases

9KMY|1|2|C|1802, 9KMY|1|2|U|1803, 9KMY|1|2|U|1804, 9KMY|1|2|G|1805, 9KMY|1|2|A|1806, 9KMY|1|2|C|1807

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|G|1723
9KMY|1|2|A|1724
9KMY|1|2|U|1725
9KMY|1|2|G|1726
9KMY|1|2|G|1727
9KMY|1|2|U|1728
9KMY|1|2|U|1729
9KMY|1|2|U|1730
9KMY|1|2|A|1731
9KMY|1|2|G|1732
9KMY|1|2|U|1733
9KMY|1|2|G|1734
9KMY|1|2|A|1735
9KMY|1|2|G|1736
*
9KMY|1|2|C|1798
9KMY|1|2|G|1799
9KMY|1|2|A|1800
9KMY|1|2|A|1801
9KMY|1|2|C|1802
9KMY|1|2|U|1803
9KMY|1|2|U|1804
9KMY|1|2|G|1805
9KMY|1|2|A|1806
9KMY|1|2|C|1807
9KMY|1|2|U|1808
9KMY|1|2|A|1809
9KMY|1|2|U|1810
9KMY|1|2|C|1811

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8

Chain X

Small ribosomal subunit protein uS12