IL_9KMZ_027

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGACUC*GAGGCCC

Length

13 nucleotides

Bulged bases

9KMZ|1|2|A|536, 9KMZ|1|2|C|537, 9KMZ|1|2|U|538, 9KMZ|1|2|G|547, 9KMZ|1|2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|534
9KMZ|1|2|G|535
9KMZ|1|2|A|536
9KMZ|1|2|C|537
9KMZ|1|2|U|538
9KMZ|1|2|C|539
*
9KMZ|1|2|G|544
9KMZ|1|2|A|545
9KMZ|1|2|G|546
9KMZ|1|2|G|547
9KMZ|1|2|C|548
9KMZ|1|2|C|549
9KMZ|1|2|C|550

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30