IL_9KMZ_042

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9KMZ|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMZ_042 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.1036

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9KMZ|1|2|G|925
9KMZ|1|2|A|926
9KMZ|1|2|C|927
*
9KMZ|1|2|G|1014
9KMZ|1|2|U|1015
9KMZ|1|2|U|1016
9KMZ|1|2|U|1017

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

Small ribosomal subunit protein uS15

Chain b

Small ribosomal subunit protein eS27