IL_9KMZ_058
3D structure
- PDB id
- 9KMZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- GCUUAAUUUGACUCAACACGGGAAACCUCACCCGGCC*GUCCGGGGCUGC
- Length
- 49 nucleotides
- Bulged bases
- 9KMZ|1|2|C|1237, 9KMZ|1|2|U|1238, 9KMZ|1|2|U|1239, 9KMZ|1|2|A|1240, 9KMZ|1|2|U|1243, 9KMZ|1|2|C|1247, 9KMZ|1|2|U|1248, 9KMZ|1|2|C|1249, 9KMZ|1|2|A|1250, 9KMZ|1|2|A|1253, 9KMZ|1|2|G|1256, 9KMZ|1|2|A|1258, 9KMZ|1|2|A|1260, 9KMZ|1|2|A|1265, 9KMZ|1|2|G|1269, 9KMZ|1|2|U|1519, 9KMZ|1|2|G|1520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMZ|1|2|G|1236
9KMZ|1|2|C|1237
9KMZ|1|2|U|1238
9KMZ|1|2|U|1239
9KMZ|1|2|A|1240
9KMZ|1|2|A|1241
9KMZ|1|2|U|1242
9KMZ|1|2|U|1243
9KMZ|1|2|U|1244
9KMZ|1|2|G|1245
9KMZ|1|2|A|1246
9KMZ|1|2|C|1247
9KMZ|1|2|U|1248
9KMZ|1|2|C|1249
9KMZ|1|2|A|1250
9KMZ|1|2|A|1251
9KMZ|1|2|C|1252
9KMZ|1|2|A|1253
9KMZ|1|2|C|1254
9KMZ|1|2|G|1255
9KMZ|1|2|G|1256
9KMZ|1|2|G|1257
9KMZ|1|2|A|1258
9KMZ|1|2|A|1259
9KMZ|1|2|A|1260
9KMZ|1|2|C|1261
9KMZ|1|2|C|1262
9KMZ|1|2|U|1263
9KMZ|1|2|C|1264
9KMZ|1|2|A|1265
9KMZ|1|2|C|1266
9KMZ|1|2|C|1267
9KMZ|1|2|C|1268
9KMZ|1|2|G|1269
9KMZ|1|2|G|1270
9KMZ|1|2|C|1271
9KMZ|1|2|C|1272
*
9KMZ|1|2|G|1510
9KMZ|1|2|U|1511
9KMZ|1|2|C|1512
9KMZ|1|2|C|1513
9KMZ|1|2|G|1514
9KMZ|1|2|G|1515
9KMZ|1|2|G|1516
9KMZ|1|2|G|1517
9KMZ|1|2|C|1518
9KMZ|1|2|U|1519
9KMZ|1|2|G|1520
9KMZ|1|2|C|1521
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Small ribosomal subunit protein eS10
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
Coloring options: