IL_9KMZ_060

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGCA*UG

Length

6 nucleotides

Bulged bases

9KMZ|1|2|G|1330, 9KMZ|1|2|C|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMZ_060 not in the Motif Atlas

Geometric match to IL_9DID_004

Geometric discrepancy: 0.3182

The information below is about IL_9DID_004

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.6

Basepair signature

cWW-cWW

Number of instances in this motif group

38

Unit IDs

9KMZ|1|2|U|1329
9KMZ|1|2|G|1330
9KMZ|1|2|C|1331
9KMZ|1|2|A|1332
*
9KMZ|1|2|U|1499
9KMZ|1|2|G|1500

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain U

Small ribosomal subunit protein uS10