IL_9KMZ_065

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9KMZ|1|2|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|C|1395
9KMZ|1|2|A|1396
9KMZ|1|2|U|1397
9KMZ|1|2|G|1398
9KMZ|1|2|C|1399
*
9KMZ|1|2|G|1447
9KMZ|1|2|A|1448
9KMZ|1|2|G|1449
9KMZ|1|2|G|1450

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain R

Small ribosomal subunit protein eS17

Chain U

Small ribosomal subunit protein uS10

Chain g

Small ribosomal subunit protein RACK1