IL_9KMZ_070

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

9KMZ|1|2|G|1606, 9KMZ|1|2|A|1607, 9KMZ|1|2|U|1608, 9KMZ|1|2|A|1630, 9KMZ|1|2|U|1631, 9KMZ|1|2|A|1633, 9KMZ|1|2|A|1634

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|G|1604
9KMZ|1|2|G|1605
9KMZ|1|2|G|1606
9KMZ|1|2|A|1607
9KMZ|1|2|U|1608
9KMZ|1|2|C|1609
9KMZ|1|2|G|1610
*
9KMZ|1|2|C|1629
9KMZ|1|2|A|1630
9KMZ|1|2|U|1631
9KMZ|1|2|G|1632
9KMZ|1|2|A|1633
9KMZ|1|2|A|1634
9KMZ|1|2|C|1635

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19