IL_9KMZ_077

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMZ_077 not in the Motif Atlas

Homologous match to IL_9PN5_227

Geometric discrepancy: 0.3337

The information below is about IL_9PN5_227

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9KMZ|1|2|U|1729
9KMZ|1|2|U|1730
9KMZ|1|2|A|1731
*
9KMZ|1|2|U|1803
9KMZ|1|2|U|1804
9KMZ|1|2|G|1805

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS8