IL_9KMZ_080

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KMZ_080 not in the Motif Atlas

Homologous match to IL_9PN5_231

Geometric discrepancy: 0.0821

The information below is about IL_9PN5_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.5

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9KMZ|1|2|C|1742
9KMZ|1|2|G|1743
9KMZ|1|2|G|1744
9KMZ|1|2|A|1745
9KMZ|1|2|U|1746
*
9KMZ|1|2|A|1788
9KMZ|1|2|G|1789
9KMZ|1|2|A|1790
9KMZ|1|2|A|1791
9KMZ|1|2|G|1792

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8