IL_9KN0_027

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UACAG*CCUGUA

Length

11 nucleotides

Bulged bases

9KN0|1|2|U|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN0_027 not in the Motif Atlas

Geometric match to IL_9JA9_001

Geometric discrepancy: 0.3501

The information below is about IL_9JA9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.6

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9KN0|1|2|U|530
9KN0|1|2|A|531
9KN0|1|2|C|532
9KN0|1|2|A|533
9KN0|1|2|G|534
*
9KN0|1|2|C|549
9KN0|1|2|C|550
9KN0|1|2|U|551
9KN0|1|2|G|552
9KN0|1|2|U|553
9KN0|1|2|A|554

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain e

Small ribosomal subunit protein eS30