IL_9KN0_041

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|G|807
9KN0|1|2|A|808
9KN0|1|2|A|809
9KN0|1|2|A|810
9KN0|1|2|A|811
9KN0|1|2|A|812
9KN0|1|2|A|813
9KN0|1|2|U|814
9KN0|1|2|U|815
*
9KN0|1|2|A|849
9KN0|1|2|C|850
9KN0|1|2|C|851
9KN0|1|2|G|852
9KN0|1|2|C|853
9KN0|1|2|A|854
9KN0|1|2|G|855
9KN0|1|2|C|856

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8