IL_9KN0_047

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9KN0|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN0_047 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1418

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9KN0|1|2|C|931
9KN0|1|2|G|932
9KN0|1|2|G|933
9KN0|1|2|G|934
9KN0|1|2|G|935
*
9KN0|1|2|C|1007
9KN0|1|2|A|1008
9KN0|1|2|A|1009
9KN0|1|2|G|1010

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain a

Small ribosomal subunit protein eS26