IL_9KN0_064
3D structure
- PDB id
- 9KN0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- CUUAAUUUGACUCAACACGGGAAACCUCACC*GGGCUG
- Length
- 37 nucleotides
- Bulged bases
- 9KN0|1|2|U|1238, 9KN0|1|2|U|1239, 9KN0|1|2|U|1243, 9KN0|1|2|C|1247, 9KN0|1|2|A|1253, 9KN0|1|2|G|1256, 9KN0|1|2|A|1258, 9KN0|1|2|C|1262, 9KN0|1|2|U|1263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KN0|1|2|C|1237
9KN0|1|2|U|1238
9KN0|1|2|U|1239
9KN0|1|2|A|1240
9KN0|1|2|A|1241
9KN0|1|2|U|1242
9KN0|1|2|U|1243
9KN0|1|2|U|1244
9KN0|1|2|G|1245
9KN0|1|2|A|1246
9KN0|1|2|C|1247
9KN0|1|2|U|1248
9KN0|1|2|C|1249
9KN0|1|2|A|1250
9KN0|1|2|A|1251
9KN0|1|2|C|1252
9KN0|1|2|A|1253
9KN0|1|2|C|1254
9KN0|1|2|G|1255
9KN0|1|2|G|1256
9KN0|1|2|G|1257
9KN0|1|2|A|1258
9KN0|1|2|A|1259
9KN0|1|2|A|1260
9KN0|1|2|C|1261
9KN0|1|2|C|1262
9KN0|1|2|U|1263
9KN0|1|2|C|1264
9KN0|1|2|A|1265
9KN0|1|2|C|1266
9KN0|1|2|C|1267
*
9KN0|1|2|G|1515
9KN0|1|2|G|1516
9KN0|1|2|G|1517
9KN0|1|2|C|1518
9KN0|1|2|U|1519
9KN0|1|2|G|1520
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Small ribosomal subunit protein eS10
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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