IL_9KN0_074
3D structure
- PDB id
- 9KN0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GACUGGCUCAGCGUG*CCGUUGAACCCCAUUC
- Length
- 31 nucleotides
- Bulged bases
- 9KN0|1|2|A|1537, 9KN0|1|2|G|1541, 9KN0|1|2|C|1542, 9KN0|1|2|U|1585, 9KN0|1|2|G|1587, 9KN0|1|2|A|1594, 9KN0|1|2|U|1595
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KN0|1|2|G|1536
9KN0|1|2|A|1537
9KN0|1|2|C|1538
9KN0|1|2|U|1539
9KN0|1|2|G|1540
9KN0|1|2|G|1541
9KN0|1|2|C|1542
9KN0|1|2|U|1543
9KN0|1|2|C|1544
9KN0|1|2|A|1545
9KN0|1|2|G|1546
9KN0|1|2|C|1547
9KN0|1|2|G|1548
9KN0|1|2|U|1549
9KN0|1|2|G|1550
*
9KN0|1|2|C|1582
9KN0|1|2|C|1583
9KN0|1|2|G|1584
9KN0|1|2|U|1585
9KN0|1|2|U|1586
9KN0|1|2|G|1587
9KN0|1|2|A|1588
9KN0|1|2|A|1589
9KN0|1|2|C|1590
9KN0|1|2|C|1591
9KN0|1|2|C|1592
9KN0|1|2|C|1593
9KN0|1|2|A|1594
9KN0|1|2|U|1595
9KN0|1|2|U|1596
9KN0|1|2|C|1597
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain Z
- Small ribosomal subunit protein eS25
- Chain d
- Small ribosomal subunit protein uS14
Coloring options: