IL_9KN5_016

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9KN5|1|S2|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN5_016 not in the Motif Atlas

Homologous match to IL_9H3G_171

Geometric discrepancy: 0.0899

The information below is about IL_9H3G_171

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9KN5|1|S2|G|312
9KN5|1|S2|A|313
9KN5|1|S2|U|314
*
9KN5|1|S2|A|336
9KN5|1|S2|C|337

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6