IL_9KN5_061

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

9KN5|1|S2|G|1207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN5_061 not in the Motif Atlas

Homologous match to IL_9PN5_196

Geometric discrepancy: 0.219

The information below is about IL_9PN5_196

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9KN5|1|S2|G|1206
9KN5|1|S2|G|1207
9KN5|1|S2|A|1208
*
9KN5|1|S2|U|1691
9KN5|1|S2|U|1692

Current chains

Chain S2

Chains: S2

Nearby chains

Chain Sa

40S ribosomal protein S26

Chain zz

Internal ribosome entry site; IRES