IL_9KN5_077

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9KN5|1|S2|C|1434, 9KN5|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN5|1|S2|U|1408
9KN5|1|S2|A|1409
*
9KN5|1|S2|U|1432
9KN5|1|S2|C|1433
9KN5|1|S2|C|1434
9KN5|1|S2|C|1435
9KN5|1|S2|C|1436
9KN5|1|S2|C|1437
9KN5|1|S2|A|1438

Current chains

Chain S2

Chains: S2

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20