IL_9KN5_085

3D structure

PDB id

9KN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 40S ribosome complexed with HCV IRES, eIF1A and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KN5_085 not in the Motif Atlas

Homologous match to IL_9PN5_221

Geometric discrepancy: 0.1005

The information below is about IL_9PN5_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.5

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9KN5|1|S2|G|1702
9KN5|1|S2|C|1703
9KN5|1|S2|C|1704
9KN5|1|S2|C|1705
*
9KN5|1|S2|G|1829
9KN5|1|S2|U|1830
9KN5|1|S2|A|1831
9KN5|1|S2|A|1832
9KN5|1|S2|C|1833

Current chains

Chain S2

Chains: S2

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain zz

Internal ribosome entry site; IRES