IL_9KO9_003

3D structure

PDB id

9KO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of PsCas9-sgRNA binary complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KO9_003 not in the Motif Atlas

Geometric match to IL_8CRE_411

Geometric discrepancy: 0.1496

The information below is about IL_8CRE_411

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

9KO9|1|B|G|105
9KO9|1|B|A|106
9KO9|1|B|C|107
*
9KO9|1|B|G|111
9KO9|1|B|U|112
9KO9|1|B|C|113

Current chains

Chain B

RNA (131-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9