IL_9KRP_020

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9KRP|1|S2|U|361, 9KRP|1|S2|C|399, 9KRP|1|S2|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|U|359
9KRP|1|S2|A|360
9KRP|1|S2|U|361
9KRP|1|S2|C|362
9KRP|1|S2|A|363
9KRP|1|S2|A|364
*
9KRP|1|S2|U|396
9KRP|1|S2|G|397
9KRP|1|S2|A|398
9KRP|1|S2|C|399
9KRP|1|S2|C|400
9KRP|1|S2|A|401
9KRP|1|S2|C|402
9KRP|1|S2|G|403

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11

Chain SX

40S ribosomal protein S23