IL_9KRP_077

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9KRP|1|S2|C|1434, 9KRP|1|S2|C|1436, 9KRP|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|U|1408
9KRP|1|S2|A|1409
*
9KRP|1|S2|U|1432
9KRP|1|S2|C|1433
9KRP|1|S2|C|1434
9KRP|1|S2|C|1435
9KRP|1|S2|C|1436
9KRP|1|S2|C|1437
9KRP|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S16

Chain SU

40S ribosomal protein S20