IL_9KRP_081

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9KRP|1|S2|A|1580, 9KRP|1|S2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|G|1550
9KRP|1|S2|U|1551
9KRP|1|S2|G|1552
9KRP|1|S2|C|1553
9KRP|1|S2|C|1554
9KRP|1|S2|U|1555
9KRP|1|S2|A|1556
9KRP|1|S2|C|1557
9KRP|1|S2|C|1558
*
9KRP|1|S2|G|1577
9KRP|1|S2|U|1578
9KRP|1|S2|A|1579
9KRP|1|S2|A|1580
9KRP|1|S2|C|1581
9KRP|1|S2|C|1582

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SK

40S ribosomal protein S10

Chain SU

40S ribosomal protein S20

Chain Sd

40S ribosomal protein S29