IL_9KRP_084

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9KRP|1|S2|C|1701, 9KRP|1|S2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|C|1700
9KRP|1|S2|C|1701
9KRP|1|S2|G|1702
*
9KRP|1|S2|C|1833
9KRP|1|S2|A|1834
9KRP|1|S2|A|1835
9KRP|1|S2|G|1836

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Sa

40S ribosomal protein S26

Chain zy

Transfer RNA; tRNA

Chain zz

Internal ribosome entry site; IRES