IL_9KRP_085

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|G|1702
9KRP|1|S2|C|1703
9KRP|1|S2|C|1704
9KRP|1|S2|C|1705
*
9KRP|1|S2|G|1829
9KRP|1|S2|U|1830
9KRP|1|S2|A|1831
9KRP|1|S2|A|1832
9KRP|1|S2|C|1833

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain zy

Transfer RNA; tRNA

Chain zz

Internal ribosome entry site; IRES