IL_9KRP_085
3D structure
- PDB id
- 9KRP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KRP_085 not in the Motif Atlas
- Homologous match to IL_9H3G_234
- Geometric discrepancy: 0.0856
- The information below is about IL_9H3G_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.5
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
9KRP|1|S2|G|1702
9KRP|1|S2|C|1703
9KRP|1|S2|C|1704
9KRP|1|S2|C|1705
*
9KRP|1|S2|G|1829
9KRP|1|S2|U|1830
9KRP|1|S2|A|1831
9KRP|1|S2|A|1832
9KRP|1|S2|C|1833
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain zy
- Transfer RNA; tRNA
- Chain zz
- Internal ribosome entry site; IRES
Coloring options: