IL_9KRP_095

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCGCC*GGCGGAGCG

Length

16 nucleotides

Bulged bases

9KRP|1|S2|C|1753, 9KRP|1|S2|C|1783

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|C|1750
9KRP|1|S2|C|1751
9KRP|1|S2|C|1752
9KRP|1|S2|C|1753
9KRP|1|S2|G|1754
9KRP|1|S2|C|1755
9KRP|1|S2|C|1756
*
9KRP|1|S2|G|1776
9KRP|1|S2|G|1777
9KRP|1|S2|C|1778
9KRP|1|S2|G|1779
9KRP|1|S2|G|1780
9KRP|1|S2|A|1781
9KRP|1|S2|G|1782
9KRP|1|S2|C|1783
9KRP|1|S2|G|1784

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6