IL_9KZX_017

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9KZX|1|L5|G|409, 9KZX|1|L5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|387
9KZX|1|L5|A|388
9KZX|1|L5|A|389
9KZX|1|L5|C|390
*
9KZX|1|L5|G|401
9KZX|1|L5|A|402
9KZX|1|L5|G|403
9KZX|1|L5|U|404
9KZX|1|L5|U|405
9KZX|1|L5|C|406
9KZX|1|L5|A|407
9KZX|1|L5|A|408
9KZX|1|L5|G|409
9KZX|1|L5|A|410
9KZX|1|L5|G|411
9KZX|1|L5|G|412
9KZX|1|L5|G|413
9KZX|1|L5|C|414

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LP

60S ribosomal protein L17

Chain LY

60S ribosomal protein L26

Chain Ll

60S ribosomal protein L39