IL_9KZX_038

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9KZX|1|L5|G|748, 9KZX|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|745
9KZX|1|L5|A|746
9KZX|1|L5|A|747
9KZX|1|L5|G|748
9KZX|1|L5|G|749
9KZX|1|L5|U|750
9KZX|1|L5|G|751
9KZX|1|L5|G|752
*
9KZX|1|L5|U|911
9KZX|1|L5|G|912
9KZX|1|L5|U|913
9KZX|1|L5|U|914
9KZX|1|L5|A|915
9KZX|1|L5|C|916
9KZX|1|L5|A|917
9KZX|1|L5|G|918
9KZX|1|L5|C|919

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a