IL_9KZX_045

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCG*CGGCG

Length

9 nucleotides

Bulged bases

9KZX|1|L5|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_045 not in the Motif Atlas

Geometric match to IL_7DLZ_006

Geometric discrepancy: 0.3765

The information below is about IL_7DLZ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76776.4

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9KZX|1|L5|C|1243
9KZX|1|L5|G|1244
9KZX|1|L5|C|1245
9KZX|1|L5|G|1246
*
9KZX|1|L5|C|1264
9KZX|1|L5|G|1265
9KZX|1|L5|G|1266
9KZX|1|L5|C|1267
9KZX|1|L5|G|1268

Current chains

Chain L5

28S ribosomal RNA

Nearby chains