IL_9KZX_070

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUUGG*UCAA

Length

10 nucleotides

Bulged bases

9KZX|1|L5|U|1757

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|U|1754
9KZX|1|L5|C|1755
9KZX|1|L5|U|1756
9KZX|1|L5|U|1757
9KZX|1|L5|G|1758
9KZX|1|L5|G|1759
*
9KZX|1|L5|U|1773
9KZX|1|L5|C|1774
9KZX|1|L5|A|1775
9KZX|1|L5|A|1776

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain zy

Transfer RNA; tRNA