IL_9KZX_114

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAAUG*CGCG

Length

11 nucleotides

Bulged bases

9KZX|1|L5|A|3711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|3708
9KZX|1|L5|U|3709
9KZX|1|L5|G|3710
9KZX|1|L5|A|3711
9KZX|1|L5|A|3712
9KZX|1|L5|U|3713
9KZX|1|L5|G|3714
*
9KZX|1|L5|C|3739
9KZX|1|L5|G|3740
9KZX|1|L5|C|3741
9KZX|1|L5|G|3742

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain zu

Transfer RNA; tRNA