IL_9KZX_115

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCAAAGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

9KZX|1|L5|U|3715, 9KZX|1|L5|G|3735

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|3714
9KZX|1|L5|U|3715
9KZX|1|L5|C|3716
9KZX|1|L5|A|3717
9KZX|1|L5|A|3718
9KZX|1|L5|A|3719
9KZX|1|L5|G|3720
9KZX|1|L5|U|3721
*
9KZX|1|L5|A|3732
9KZX|1|L5|A|3733
9KZX|1|L5|U|3734
9KZX|1|L5|G|3735
9KZX|1|L5|A|3736
9KZX|1|L5|A|3737
9KZX|1|L5|G|3738
9KZX|1|L5|C|3739

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain zu

Transfer RNA; tRNA