IL_9KZX_144

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_144 not in the Motif Atlas

Homologous match to IL_9H3G_129

Geometric discrepancy: 0.2272

The information below is about IL_9H3G_129

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_34443.2

Basepair signature

cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9KZX|1|L5|C|4596
9KZX|1|L5|U|4597
9KZX|1|L5|C|4598
9KZX|1|L5|A|4599
9KZX|1|L5|G|4600
9KZX|1|L5|U|4601
9KZX|1|L5|A|4602
9KZX|1|L5|C|4603
*
9KZX|1|L5|G|4608
9KZX|1|L5|G|4609
9KZX|1|L5|A|4610
9KZX|1|L5|A|4611
9KZX|1|L5|C|4612
9KZX|1|L5|C|4613
9KZX|1|L5|G|4614

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LH

60S ribosomal protein L9

Chain LV

60S ribosomal protein L23