IL_9KZX_153

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

9KZX|1|L5|C|4757, 9KZX|1|L5|U|4758, 9KZX|1|L5|A|4764, 9KZX|1|L5|G|4870, 9KZX|1|L5|C|4871, 9KZX|1|L5|G|4873, 9KZX|1|L5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|4756
9KZX|1|L5|C|4757
9KZX|1|L5|U|4758
9KZX|1|L5|C|4759
9KZX|1|L5|G|4760
9KZX|1|L5|G|4761
9KZX|1|L5|A|4762
9KZX|1|L5|U|4763
9KZX|1|L5|A|4764
9KZX|1|L5|G|4765
*
9KZX|1|L5|U|4869
9KZX|1|L5|G|4870
9KZX|1|L5|C|4871
9KZX|1|L5|G|4872
9KZX|1|L5|G|4873
9KZX|1|L5|A|4874
9KZX|1|L5|G|4875
9KZX|1|L5|U|4876
9KZX|1|L5|G|4877

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a