IL_9KZX_156

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAACG*CUCGC

Length

11 nucleotides

Bulged bases

9KZX|1|L5|A|4894, 9KZX|1|L5|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|4891
9KZX|1|L5|A|4892
9KZX|1|L5|A|4893
9KZX|1|L5|A|4894
9KZX|1|L5|C|4895
9KZX|1|L5|G|4896
*
9KZX|1|L5|C|4924
9KZX|1|L5|U|4925
9KZX|1|L5|C|4926
9KZX|1|L5|G|4927
9KZX|1|L5|C|4928

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a