IL_9KZX_179
3D structure
- PDB id
- 9KZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UACGCA*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 9KZX|1|S2|C|65, 9KZX|1|S2|C|67
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9KZX_179 not in the Motif Atlas
- Homologous match to IL_9PN5_148
- Geometric discrepancy: 0.282
- The information below is about IL_9PN5_148
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21667.4
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
9KZX|1|S2|U|63
9KZX|1|S2|A|64
9KZX|1|S2|C|65
9KZX|1|S2|G|66
9KZX|1|S2|C|67
9KZX|1|S2|A|68
*
9KZX|1|S2|U|81
9KZX|1|S2|G|82
9KZX|1|S2|A|83
9KZX|1|S2|A|84
9KZX|1|S2|A|85
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
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