IL_9KZX_180

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAUGGU*AACGUC

Length

14 nucleotides

Bulged bases

9KZX|1|S2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|G|108
9KZX|1|S2|U|109
9KZX|1|S2|U|110
9KZX|1|S2|A|111
9KZX|1|S2|U|112
9KZX|1|S2|G|113
9KZX|1|S2|G|114
9KZX|1|S2|U|115
*
9KZX|1|S2|A|348
9KZX|1|S2|A|349
9KZX|1|S2|C|350
9KZX|1|S2|G|351
9KZX|1|S2|U|352
9KZX|1|S2|C|353

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11