IL_9KZX_212

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9KZX|1|S2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_212 not in the Motif Atlas

Homologous match to IL_9PN5_185

Geometric discrepancy: 0.1967

The information below is about IL_9PN5_185

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9KZX|1|S2|C|931
9KZX|1|S2|G|932
9KZX|1|S2|G|933
9KZX|1|S2|G|934
9KZX|1|S2|G|935
*
9KZX|1|S2|C|1007
9KZX|1|S2|A|1008
9KZX|1|S2|A|1009
9KZX|1|S2|G|1010

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain Lc

60S ribosomal protein L30

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain Sa

40S ribosomal protein S26