IL_9KZX_220

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9KZX_220 not in the Motif Atlas

Homologous match to IL_9H3G_207

Geometric discrepancy: 0.4307

The information below is about IL_9H3G_207

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

59

Unit IDs

9KZX|1|S2|G|1108
9KZX|1|S2|C|1109
9KZX|1|S2|G|1110
*
9KZX|1|S2|C|1123
9KZX|1|S2|C|1124

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SB

40S ribosomal protein S3a

Chain SR

40S ribosomal protein S17

Chain Sb

40S ribosomal protein S27