IL_9KZX_228
3D structure
- PDB id
- 9KZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- ACAGGAUUG*CUCGAUU
- Length
- 16 nucleotides
- Bulged bases
- 9KZX|1|S2|G|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KZX|1|S2|A|1282
9KZX|1|S2|C|1283
9KZX|1|S2|A|1284
9KZX|1|S2|G|1285
9KZX|1|S2|G|1286
9KZX|1|S2|A|1287
9KZX|1|S2|U|1288
9KZX|1|S2|U|1289
9KZX|1|S2|G|1290
*
9KZX|1|S2|C|1309
9KZX|1|S2|U|1310
9KZX|1|S2|C|1311
9KZX|1|S2|G|1312
9KZX|1|S2|A|1313
9KZX|1|S2|U|1314
9KZX|1|S2|U|1315
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- 40S ribosomal protein S12
- Chain sh
- Ubiquitin-40S ribosomal protein S27a
Coloring options: