IL_9KZX_254

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCCGCC*GCGGAGCG

Length

15 nucleotides

Bulged bases

9KZX|1|S2|C|1753, 9KZX|1|S2|C|1783

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|C|1750
9KZX|1|S2|C|1751
9KZX|1|S2|C|1752
9KZX|1|S2|C|1753
9KZX|1|S2|G|1754
9KZX|1|S2|C|1755
9KZX|1|S2|C|1756
*
9KZX|1|S2|G|1777
9KZX|1|S2|C|1778
9KZX|1|S2|G|1779
9KZX|1|S2|G|1780
9KZX|1|S2|A|1781
9KZX|1|S2|G|1782
9KZX|1|S2|C|1783
9KZX|1|S2|G|1784

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24