IL_9KZX_259

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGACCG*CGCUCAAUG

Length

15 nucleotides

Bulged bases

9KZX|1|zz|A|185, 9KZX|1|zz|U|216

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|zz|C|183
9KZX|1|zz|G|184
9KZX|1|zz|A|185
9KZX|1|zz|C|186
9KZX|1|zz|C|187
9KZX|1|zz|G|188
*
9KZX|1|zz|C|209
9KZX|1|zz|G|210
9KZX|1|zz|C|211
9KZX|1|zz|U|212
9KZX|1|zz|C|213
9KZX|1|zz|A|214
9KZX|1|zz|A|215
9KZX|1|zz|U|216
9KZX|1|zz|G|217

Current chains

Chain zz

HCV IRES

Nearby chains

Chain 3a

Eukaryotic translation initiation factor 3 subunit A