IL_9L0R_027

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

GCAU*AC

Length

6 nucleotides

Bulged bases

9L0R|1|B|C|338, 9L0R|1|B|A|339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9L0R_027 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2234

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9L0R|1|B|G|337
9L0R|1|B|C|338
9L0R|1|B|A|339
9L0R|1|B|U|340
*
9L0R|1|B|A|364
9L0R|1|B|C|365

Current chains

Chain B

RNA (700-MER)

Nearby chains