IL_9L0R_041

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

CAAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9L0R_041 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3241

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

9L0R|1|C|C|299
9L0R|1|C|A|300
9L0R|1|C|A|301
9L0R|1|C|G|302
*
9L0R|1|C|C|315
9L0R|1|C|G|316
9L0R|1|C|A|317
9L0R|1|C|G|318

Current chains

Chain C

RNA (700-MER)

Nearby chains