IL_9L0R_076

3D structure

PDB id

9L0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptococcus agalactiae GOLLD RNA dodecamer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

UUG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9L0R_076 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.2057

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9L0R|1|E|U|345
9L0R|1|E|U|346
9L0R|1|E|G|347
*
9L0R|1|E|C|357
9L0R|1|E|G|358
9L0R|1|E|A|359

Current chains

Chain E

RNA (700-MER)

Nearby chains

Chain F

Giant, ornate, lake- and Lactobacillales-derived (GOLLD) RNA