IL_9M0P_138

3D structure

PDB id

9M0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of human 80S ribosome in complex with montanine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9M0P_138 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2757

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9M0P|1|L5|C|4739
9M0P|1|L5|G|4740
9M0P|1|L5|C|4741
9M0P|1|L5|G|4742
*
9M0P|1|L5|C|4957
9M0P|1|L5|C|4958
9M0P|1|L5|U|4959
9M0P|1|L5|G|4960

Current chains

Chain L5

28S ribosomal RNA|HOMO SAPIENS

Nearby chains